Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKHYDTIIIGGGPAGMMAAISSNFYGNKTLLIEKNKRLGKKLAGTGGGRCNVTN-NGNLDELLAGIPGNGRFLYSVFSQFDNHDIINFFQDNGVTLKEEDHGRMFPTTDKSRTIINALENKIKELGGQIMTDTEVVSVKKIGDSFYIKTKDTQFASDKLIVTTGGKSYPSTGSTGFGHDIARHFKLEVTDMEAAESPLLTDFPH----KKLQGISLDDVTLSFEKHIIT-H-DLLFTHFGLSGPAALRISSFVKGGETIYLDVLPNISVKELETHFQ-NEREKSLKNALKILLPERLAEFYAEDLPE---KVKQVSVKDLETLIQKLKKLPILVTGKMSLAKSFVTKGGVDLKEINPKTLESKKVAGLHFAGEVLDINAHTGGFNITSALCTGWVAGSLHY |
| 3V76 Chain:A ((28-417)) | ---QDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFL---SGNPHFCKSALARYRPQDFVALVERHGIGWHEKTLGQLFC-DHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAGTVDAASLVVASGGKSIPKMGATGLAYRIAEQFGLPVVETRPALVPLTLDQAQLAKLGALAGVAADAEARF---GKAAFREAVLITHRGLSGPAILQISSYWREGEEIVLRLMPDIDIASILKGMRRANGRQAVQTALADILPRRLAQFFADEAKLTGRMLADLSDKTIDALASSIQVWAVKPAGSEGYRTAEVTLGGVDTRALDSRTMQAKEVPGLYFVGECVDVTGWLGGYNFQWAWASGFVAGQDV- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3V76.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -177994 for 3367 contacts (-52.9/contact) +
2D Compatibility (PS) -40265 + (NN) -4780 + (LL) 936
1D Compatibility (HY) -25200 + (ID) 6100
Total energy: -253403.0 ( -75.26 by residue)
QMean score : 0.488
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