Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK-KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQ---TLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTED--LYDYIDKYNIELDPRFNDILG---RHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQARMGSSSMPGGSTPVSSANMMSGISSVPTPSPLGPLAGSPVIAAANPLGMPVPAAAGAQQ |
4BGQ Chain:A ((11-300)) | -----------------------------------MNKFEILGVVGEGAYGVVLKCRHKETHEIVAIKKFK---VKETTLRELKMLRTLK-QENIVELKEAFRRR--GKLYLVFEYVEKNMLELLEEMPNGVPPEKVKSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHN-DVLKLCDFGFARNLSE---------TRWYRSPELLLG-APYGKSVDMWSVGCILGELSDGQPL-FPGESEIDQLFTIQKVLGPLPSEQMKLFY-----SNPRFHGLRFPAVNHPQSLERRY-----LGILNSVLLDLMKNLLKLDPADRYLTEQCLNHPTFQTQRL-------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4BGQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -144031 for 2014 contacts (-71.5/contact) +
2D Compatibility (PS) -27981 + (NN) -9226 + (LL) 4820
1D Compatibility (HY) -25200 + (ID) 4100
Total energy: -205718.0 ( -102.14 by residue)
QMean score : 0.591
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