Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK-KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQ---TLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWRLGCMLASMIFRKEPFFHGRDNYDQLVRIAKFLGTEDLYGYIDKYNIELDPRFNDILG---RHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQARMGSSSMPGGSTPVSSANVMSGISSVPTPSPLGPLAGSPVIAAANPLGMPVPAATGAQQ |
| 4BGQ Chain:A ((11-300)) | -----------------------------------MNKFEILGVVGEGAYGVVLKCRHKETHEIVAIKKFK---VKETTLRELKMLRTLK-QENIVELKEAFRRR--GKLYLVFEYVEKNMLELLEEMPNGVPPEKVKSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHN-DVLKLCDFGFARNLSE---------TRWYRSPELLLG-APYGKSVDMWSVGCILGELSDGQPL-FPGESEIDQLFTIQKVLGPLPSEQM-KLF--YSNPRFHGLRFPAVNHPQSLERRY-----LGILNSVLLDLMKNLLKLDPADRYLTEQCLNHPTFQTQRL-------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4BGQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -133683 for 2036 contacts (-65.7/contact) +
2D Compatibility (PS) -28219 + (NN) -8858 + (LL) 4656
1D Compatibility (HY) -24400 + (ID) 4000
Total energy: -194504.0 ( -95.53 by residue)
QMean score : 0.589
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