Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKPIKTYDIKEEELAKTAYATIKTNKGNITLELFYKDAPQAVSNFVTLAKEGF---YNGLNFHRVIAGFVAQGGCPYG-TGTGG---PEHRIKCEVAHNPNKHQ-RGSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTVFGKITSAESLSVLDKIKQGDIIESVVFSPSL
3PMP Chain:A ((12-154))
---------------------NDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADEN--FQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEG--LDIVRKVEGKGSASGKTNATIK
General information:
TITO was launched using:
RESULT:
Template:
3PMP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56970 for 986 contacts (-57.8/contact) +
2D Compatibility (PS) -14336 + (NN) -6388 + (LL) 2180
1D Compatibility (HY) -3600 + (ID) 2350
Total energy: -81464.0 ( -82.62 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_3PMP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PMP-query.scw
PDB file :
Tito_Scwrl_3PMP.pdb
: