Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIKNKVIIITGASSGIGKATALLLAEKGAKLVLAARRVEKLEKIVQTIKANSGEAIFAKTDVTKREDNKKLVELAIERYGKVDAIFLNAGIMPNSPLSALKEDEWEQMIDINIKGVLNGIAAVLPSFIAQKSGHIIATSSVAGLKAYPGGAVYGATKWAVRDLMEVLRMESAQEGTNIRTVTIYPAAINTELLETITDKETEQGMT-SLYKQYGITPDRIASIVAYAIDQPEDVNVNEFTVGPTSQPW
2JAH Chain:A ((4-245))
-ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLR-SKGTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQEVT--ERGVRVVVIEPGTTDTELRGHITHTATKEMYEQRISQIRKLQAQDIAEAVRYAVTAPHHATVHEIFIRPTD---
General information:
TITO was launched using:
RESULT:
Template:
2JAH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145257 for 2124 contacts (-68.4/contact) +
2D Compatibility (PS) -26193 + (NN) -8600 + (LL) 688
1D Compatibility (HY) -13200 + (ID) 4250
Total energy: -196812.0 ( -92.66 by residue)
QMean score : 0.681
(partial model without unconserved sides chains):
PDB file :
Tito_2JAH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JAH-query.scw
PDB file :
Tito_Scwrl_2JAH.pdb
: