Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPTDRRVRADAARNRARVLEVAYQTFAADGL-SVPVDEIARRAGVGAGTVYRHFPTKEALFQAVIADRMHRIIDKG-HALLK-SKHPGDALFAFLRSMVLQWGATDRGL--VEALAGVGI--EISSA----APEAEADFLDLLTDLLRAAQRAGTVRPDVDVLEVKTLLVGCQAMQSYNAELAAKVTDVALDGLRANRK
4YZE Chain:A ((7-169))
------------HDTREHLLATGEQLSLQRGFTGMGLSELLKTAEVPKGSFYHYFRSKEAFGVAMLERHYAAYHQRLTELLQSGEGNYRDRILAYYQQTLNQ-FSQHGTISGCLTVKLSAEVSDLSEDMRSAMDKGARGVIALLSQALENGRENHSLTFSGEPLQQAQVLYALWLG------------------------
General information:
TITO was launched using:
RESULT:
Template:
4YZE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74369 for 983 contacts (-75.7/contact) +
2D Compatibility (PS) -16684 + (NN) -10278 + (LL) 2864
1D Compatibility (HY) -8400 + (ID) 1200
Total energy: -108067.0 ( -109.94 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_4YZE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YZE-query.scw
PDB file :
Tito_Scwrl_4YZE.pdb
: