Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------------------------------------------MTVPARP-TPLFADIADVSRRLAETGY-LPDTATATAVFLADRL------GKPLLVEGPAGVGKTELARAVAQATGSGLVRLQCYEGVDEARALYEWNHAKQILRIQAGSGDWEATKTDVFSEEFLLQRPLLTAIRRTEPT--VLLIDETDKADIEIEGLLLEVLSDFAVTVPELGTLTAT---RAPFVLLTSNATRELSEALKRRCLYLHIDFPTPELERRILLSRVPELPEHFAEELVRIIGVLRGMQLKKVPSIAETIDWGRTVLALGLDTIDDAVVAATLGVVLKHQSDQQRATGELRLN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| 3M6A Chain:A ((7-531)) | TGEVQTLTEKIEEAGMPDHVKETALKELNRYEKIPSSSAESSVIRNYIDWLVALPWTDETDDKLDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRIS-------------------------------------------LGGRIIQGMKKAGKLNPVFLLDEIDKM-----SAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKD-------HLLPKQIKEHGLKKSNLQLRDQAILDIIRYY--TREAGVRSLERQLAAICRKAAKAIVAEERK---RITVTEKNLQDFIGKRIFRYGQAETEDQVGVVTGLAYTTVGGDTLSIEVSLSPGKGKLILTGKLGDVMRESAQAAFSYVRSKTEELGIEPDFHEKYDIHIHVPEGAVPKDGPAAGITMATALVSALTGRAVSREVGMTGEITLRGRVLPIGGLKEKALGAHRAGLTTIIAPKDNEKDIEDIPESVREGLTFILASHLDEVLEHALV |
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General information:
TITO was launched using:
| RESULT:
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Template: 3M6A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -111033 for 1639 contacts (-67.7/contact) +
2D Compatibility (PS) -24239 + (NN) -3462 + (LL) 4428
1D Compatibility (HY) -8000 + (ID) 2450
Total energy: -144756.0 ( -88.32 by residue)
QMean score : 0.440
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