Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRSQKVILTNMCLIED---NKGRIVMQIRDPKRYSWSG-AALPGGHIEE--GESLYDALVREVHEETGLTISNPKLVGMKHWYTDEG-IRYLVFLYKTYDFSGEL--QSSDEGDVVWIERSQLDKIELAYDMLNLLRVFDEDDISEMFYSKRLEDGFIRKFY
3GZ5 Chain:A ((21-155))
------QLLTVDAVLFTYHDQQLKVLLVQRSNH--PFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCTVGNNSRDARGWSVTVCYTALMSYQACQIQIASVSDVKWWPLADVLQMPLAFDHLQLIEQARERLTQKALYSLVPGFALSEPFT
General information:
TITO was launched using:
RESULT:
Template:
3GZ5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62219 for 936 contacts (-66.5/contact) +
2D Compatibility (PS) -13862 + (NN) -6221 + (LL) 628
1D Compatibility (HY) -5600 + (ID) 1350
Total energy: -88624.0 ( -94.68 by residue)
QMean score : 0.405
(partial model without unconserved sides chains):
PDB file :
Tito_3GZ5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GZ5-query.scw
PDB file :
Tito_Scwrl_3GZ5.pdb
: