Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEDFLLSNGYQLGKTIGEGTYSKVKEAFSKKHQRKVAIKVIDKMGGP-EEFIQRFLPRELQIVRTLDHKNIIQVYEMLESADGKICLVMELAEGGDVFDCVLNGGPLPESRAKALFRQMVEAIRYCHG-CGVAHRDLKCENALLQ-GFNLKLTDFGFAKVLPKSHRELSQTFCGSTAYAAPEVLQGIPHDSKKGDVWSMGVVLYVMLCASLPFDDTDIPKMLW-QQQKGVSFPTHLSISADCQDLLKRLLEPDMILRP-----SIEEVSWHPWLAST
4GV1 Chain:A ((7-270))
------MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAH-TLTENRVLQNSRHPFLTALKYSFQT-HDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDG-ATMKTFCGTPEYLAPEVLEDNDYG-RAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPR--TLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGI
General information:
TITO was launched using:
RESULT:
Template:
4GV1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147803 for 2013 contacts (-73.4/contact) +
2D Compatibility (PS) -27178 + (NN) -12089 + (LL) 1288
1D Compatibility (HY) -16800 + (ID) 3900
Total energy: -206482.0 ( -102.57 by residue)
QMean score : 0.440
(partial model without unconserved sides chains):
PDB file :
Tito_4GV1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GV1-query.scw
PDB file :
Tito_Scwrl_4GV1.pdb
: