Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIEQDLQNRLVDQEILHGSDLLDEIHEVKQNNEQLIIELNTKYHT-KKEVTKYLSDITGKPVDPSVDVSLPFYSDFGKHITFGKNIFINLNVTFVDLGGITIEDNVLIGPGARLVTVNHLVSPKKRR-GL-RVAPICVKKNAWIGANTTILSGVTIGENAIVAADATVTKDVPPNVIVAGSPAKQIRKIIEE
1OCX Chain:A ((1-182))
---STEKEKMIAGELYRS--ADETLSRDRLRARQLIHRYNHSLAEEHTLRQQILADLFGQ-VT-EAYIEPTFRCDYGYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARIIKKL---
General information:
TITO was launched using:
RESULT:
Template:
1OCX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132076 for 1404 contacts (-94.1/contact) +
2D Compatibility (PS) -19599 + (NN) -5204 + (LL) 544
1D Compatibility (HY) -13200 + (ID) 2900
Total energy: -172435.0 ( -122.82 by residue)
QMean score : 0.667
(partial model without unconserved sides chains):
PDB file :
Tito_1OCX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OCX-query.scw
PDB file :
Tito_Scwrl_1OCX.pdb
: