Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKEITDATFEQE-TSEGLVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV
1NSW Chain:A ((3-104))
--MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLADVL
General information:
TITO was launched using:
RESULT:
Template:
1NSW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43848 for 727 contacts (-60.3/contact) +
2D Compatibility (PS) -10511 + (NN) 1579 + (LL) 400
1D Compatibility (HY) -11600 + (ID) 2600
Total energy: -66580.0 ( -91.58 by residue)
QMean score : 0.613
(partial model without unconserved sides chains):
PDB file :
Tito_1NSW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NSW-query.scw
PDB file :
Tito_Scwrl_1NSW.pdb
: