Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKHYDTIIIGGGPAGMMAAISSNFYGNKTLLIEKNKRLGKKLAGTGGGRCNVTN-NGNLDELLAGIPGNGRFLYSVFSQFDNHDIINFFQDNGVTLKEEDHGRMFPTTDKSRTIINALENKIKELGGQIMTDTEVVSVKKI--GDSFY--IKTKDTQFASDKLIVTTGGKSYPSTGSTGFGHDIARHFKLEVTDMEAAESPLLTDFPH---KKLQGISLDDVTLSFE-KHI-ITHDLLFTHFGLSGPAALRISSFVKGGETIYLDVLPNISVKELETHFQ-NEREKSLKNALKILLPERLAEFYAEDLPE---KVKQVSVKDLETLIQKLKKLPILVTGKMSLAKSFVTKGGVDLKEINPKTLESKKVAGLHFAGEVLDINAHTGGFNITSALCTGWVAGSLHY |
2GQF Chain:A ((2-399)) | SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHY---LSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCD-EGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRASLVPFTYRETDKFLTALSGISLPVT--ITALCGKSFYNQLLFTHRGISGPAVLQISNYWQPTESVEIDLLPNHNVEEEINQAKQSSPKQMLKTILVRLLPKKLVELWIEQGIVQDEVIANISKVRVKNLVDFIHHWEFTPNGTEGYRTAEVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALSIS |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GQF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -157975 for 3390 contacts (-46.6/contact) +
2D Compatibility (PS) -41257 + (NN) -9070 + (LL) 428
1D Compatibility (HY) -25200 + (ID) 6000
Total energy: -239074.0 ( -70.52 by residue)
QMean score : 0.489
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