Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPTDRRVRADAARNRARVLEVAYQTFAADGL-SVPVDEIARRAGVGAGTVYRHFPTKEALFQAVIADRMHRIIDKGHALLKSKHPGDALFAFLRSMVLQWGATDRGLVEALAGVGIEISS----AAPEAEADFLDLLTDLLRAAQRAGTVRPDVDVLEVKTLLVGCQAMQ----S-----------YNAELAAKVTDVALDGLRANRK
3DEW Chain:A ((8-199))
-------------DCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYHFGGKEGLYAAVLQEQFACFGQLDDIRGQAGDPLAVMTAYLRWTIQR-HRNNPQLLRFYTSELTNPTPCFAAIVSPAIASVIRLLAESIEAGMTRGLFRRDLHAVNSALALAGMVNYFFLSTLATEGLTSHSPDQDEELIRQYVAIFTRGIMA---
General information:
TITO was launched using:
RESULT:
Template:
3DEW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80786 for 1211 contacts (-66.7/contact) +
2D Compatibility (PS) -18985 + (NN) -14915 + (LL) 1276
1D Compatibility (HY) -7600 + (ID) 1950
Total energy: -122960.0 ( -101.54 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_3DEW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DEW-query.scw
PDB file :
Tito_Scwrl_3DEW.pdb
: