Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTDNHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRLLDIDVERRPYPSPMLVGTFAL-AP-CV-A--ERNRL--YVDSQGGLAYFYPIGFDRARLVVSFPREEAREL-MADTRGESLRRRLQRFVGDESAEAIAAVTGTSRFKGIPIG-YLNLDRYWADNVAMLGDAIHNVHPITGQGMNLAIEDASALADALDLALRDACALEDALAGYQAERFPVNQAIVSYGHALATSLEDRQRFAGVFDTALQGSSRTPEALGGERSYQPVRSPAPLG |
| 3ALJ Chain:A ((11-345)) | ----TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTP-PTYETWMHNKSV-SKET---FNGLPWRIMTRSHLHDALVNRARA-LGVDISVNSEAVAADPV-----GRLTLQTGEVLEADLIVGADGVGSKVRD-SIGFKQDRWVSKDGLIRLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELYLGLMAPAADPRGSSVPIDL-EVWV----EMFPF-LEPCLIEAAKLKT-ARYDKYETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEEGS----SVEDALVAWETRIRPITDRCQALSGD--------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ALJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -233841 for 2883 contacts (-81.1/contact) +
2D Compatibility (PS) -34639 + (NN) -5285 + (LL) 3980
1D Compatibility (HY) -7200 + (ID) 3050
Total energy: -280035.0 ( -97.13 by residue)
QMean score : 0.476
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