Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDDITSVSDQNFKSEVADYKG-FVLVDFWAEWCRPCKNLMPRVEQLAK---DKKGKIKICKFNIDGG--AEVLSKYGIQSIPTLIIFQDGKEIARKIG--TINDLSSWVDDEIS
2TRX Chain:A ((1-108))
-SDKIIHL-TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ---GKLTVAKLNID--QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA
General information:
TITO was launched using:
RESULT:
Template:
2TRX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77241 for 677 contacts (-114.1/contact) +
2D Compatibility (PS) -10680 + (NN) -2418 + (LL) -112
1D Compatibility (HY) -7600 + (ID) 1900
Total energy: -99951.0 ( -147.64 by residue)
QMean score : 0.673
(partial model without unconserved sides chains):
PDB file :
Tito_2TRX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2TRX-query.scw
PDB file :
Tito_Scwrl_2TRX.pdb
: