Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIEQDLQNRLVDQEILHGSDLLDEIHEVKQNNEQLIIELNTKYHTKKEVTKYLSDITGKPVDPSVDVSLPFYSDFGKHITFGKNIFINLNVTFVDLGGITIEDNVLIGPGARLVTVNHLVSPKKRR--GLRVAPICVKKNAWIGANTTILSGVTIGENAIVAADATVTKDVPPNVIVAGSPAKQIRKIIEE
3NZ2 Chain:A ((6-187))
---MSELEKMLKGEHFDG--ASAEIEALRSQAGRLKLEINQSLDE-AERYALQRELFG-HLGHKSCVQPPFHCEFGKTIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNVVINQGVTIGARSVVAANSVVNQDVPPDTLVGGTPARILRSLK--
General information:
TITO was launched using:
RESULT:
Template:
3NZ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136915 for 1432 contacts (-95.6/contact) +
2D Compatibility (PS) -19742 + (NN) -7172 + (LL) 748
1D Compatibility (HY) -12000 + (ID) 3000
Total energy: -178081.0 ( -124.36 by residue)
QMean score : 0.600
(partial model without unconserved sides chains):
PDB file :
Tito_3NZ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NZ2-query.scw
PDB file :
Tito_Scwrl_3NZ2.pdb
: