Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTELEKMIAGEMYDPSDRELAHGRNRARKFCREINDAM--DSESRASVLKRLFGG-TKENVYVEPDFRVDYGSNIYVGENFYANFDCVILDVCEVHIGDNCMMAPGVHIYTATHPLDPVERNSGLELGKPVEIGDNVWIGGRAIINPGVKLGNNVVVASGAVVTKSFPDNVVVAGNPARVIKTIEVEEK
3HJJ Chain:A ((4-190))
MKTEKDKMLAGEMYIADDEELVADRVEAKRLTRLYNEAVETGDERRFTLLNQLLGSSADGKAQINPDFRCDYGYNIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIINPGVSIGDNAVIASGAVVTKDVPNNVVVGGNPAKVIKTIEE---
General information:
TITO was launched using:
RESULT:
Template:
3HJJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139135 for 1456 contacts (-95.6/contact) +
2D Compatibility (PS) -20820 + (NN) -13306 + (LL) 272
1D Compatibility (HY) -20400 + (ID) 5900
Total energy: -199289.0 ( -136.87 by residue)
QMean score : 0.622
(partial model without unconserved sides chains):
PDB file :
Tito_3HJJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HJJ-query.scw
PDB file :
Tito_Scwrl_3HJJ.pdb
: