Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKAIVMDFDGIVIDTEVVWYEIFKEWFKTKQNYDLSIEEFLQCVGSNVDDLFRELNEKNQMDI---NRQVFEAETQATFIENSKSLPAKEGVESFIRELKERGLKLALATSSQRPKPLYHLERLGLLEYFDAIITAEDVTRIKPEPDLFLEALRALDVKASESLIVEDSRNGLLAGNSAGVNVLVIPNEVTKHSD--LTPNYLERESLAEVDLTEIMAEYNK
3S6J Chain:A ((5-222))
PQTSFIFDLDGTLTDSVYQNVAAWKEALDA-ENIPLAMWRIHRKIGMSGGLMLKSLSRE----ITDEQAERLSEKHAQAYERLQHQIIALPGAVELLETLDKENLKWCIATSGGIDTATINLKALKLDINKINIVTRDDVSYGKPDPDLFLAAAKKIGAPIDECLVIGDAIWDMLAARRCKATGVGLLSGGYDIGELERAGALRVYEDPLDL--LNHLDEI--
General information:
TITO was launched using:
RESULT:
Template:
3S6J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79294 for 1881 contacts (-42.2/contact) +
2D Compatibility (PS) -22670 + (NN) -11030 + (LL) 320
1D Compatibility (HY) -8000 + (ID) 2050
Total energy: -122724.0 ( -65.24 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_3S6J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S6J-query.scw
PDB file :
Tito_Scwrl_3S6J.pdb
: