Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTAVAAGALVVETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNETLGNSIRAA-V-DPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFP--SLGAAAYPVQRRGMEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQ-PIRNIVEPAVDASIALLGPRS
3COL Chain:A ((10-195))
--------------NKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVYLYFKNKQALIDSVYARETNRILSTTDLDRLSDSTIDVTTRIRLYVQQVYDYSLANPDSLTIIQQIKALNGQ-------DADPNNIVANLLTAAIDAKVIK--Q--LPVSLHMGVVFSTIHTHTTNISKGRYAQDQYTFGDIFQMIWDAMKQ--
General information:
TITO was launched using:
RESULT:
Template:
3COL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71563 for 1243 contacts (-57.6/contact) +
2D Compatibility (PS) -18832 + (NN) -10471 + (LL) 2252
1D Compatibility (HY) -1600 + (ID) 800
Total energy: -101014.0 ( -81.27 by residue)
QMean score : 0.518
(partial model without unconserved sides chains):
PDB file :
Tito_3COL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3COL-query.scw
PDB file :
Tito_Scwrl_3COL.pdb
: