Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPDRKLRLGEELISPLHALYDGLQVDGAPRPAHRAAEH--PVWVVTRYRDARKVLNHPG-VRR-DARQAAELYAKRTGSPRAGIGEGLSHHMLNLDPPDHTRLRSLVGRAFTPRQVERLQPHIERITEALLDAMAGREQADLMADFAIPLTIAVIFELLGIPEAEREHARQSWERQAELLSPE-EAQALADAQVDYLRVLLEAKRRQPADDVYSGLVQAAD-ESGQLSEAELVSMAHLLMMSGFETTMNMIGNALVTLLVNPEQLALLRAQPELLPNAMEELVRHDSPVRASMLRFTVEDVELDGVTIPAGEYILVSNLTANHDAERFDDPDRLDLTRNTDGHLGYGFGVHYCVGASLARLEGRIAIQRLLARFPDLQLAVPHAELQWLPITFLRALISVPVRTGCSAPANTASHANPIERIAQ |
3A4G Chain:A ((15-403)) | --------SGTFWQNPHPAYAALRA-E--DPVRKLALPDGPVWLLTRYADVREAFVDPRLSKDWRHTLP--EDQR--AD----MPATPTPMMILMDPPDHTRLRKLVGRSFTVRRMNELEPRITEIADGLLAGLPTDGPVDLMREYAFQIPVQVICELLGVPAEDRDDFS-AWSSVLVDDSPADDKNAAMGKLHGYLSDLLERKRTEPDDALLSSLLAVSDEDGDRLSQEELVAMAMLLLIAGHETTVNLIGNGVLALLTHPDQRKLLAEDPSLISSAVEEFLRFDSPVSQAPIRFTAEDVTYSGVTIPAGEMVMLGLAAANRDADWMPEPDRLDITRDASGGVFFGHGIHFCLGAQLARLEGRVAIGRLFADRPELALAVGLDELVYRESTLVRGLSRMPVTMGPRSA--------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3A4G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -196115 for 3094 contacts (-63.4/contact) +
2D Compatibility (PS) -41722 + (NN) -22759 + (LL) 2064
1D Compatibility (HY) -31600 + (ID) 7750
Total energy: -297882.0 ( -96.28 by residue)
QMean score : 0.622
|
|
|