Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPTDRRVRADAARNRARVLEVAYQTFAADGLSVPVDEIARRAGVGAGTVYRHFPTKEALFQAVIADRMHRIIDKGHALLKSKHPGDALFAFLRSMVLQWGATDRGLVEALAGVGIEISSAA-PEAEADFLDLLTDLLRAAQRAGTVRPDVDVLEVKTLLVGCQAMQS---YNAELAAKVTDVALDGLRANRK
2REK Chain:A ((12-192))
---------ADARRNYDRIIEAAAAEVARHGADASLEEIARRAGVGSATLHRHFPSRWGLLQAVFQERVAQLCDEARSLAAEHPPATALTRWLTSLAVF-GAVTRGAARSL--------AALDSRCEQLLTEAGADLLARAQEDGTVRDDVTALELLSLANAVSLAAEHTPDAAHHATRLMGIALGGLGA---
General information:
TITO was launched using:
RESULT:
Template:
2REK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100069 for 1265 contacts (-79.1/contact) +
2D Compatibility (PS) -18626 + (NN) -15209 + (LL) 1396
1D Compatibility (HY) -6400 + (ID) 3200
Total energy: -142108.0 ( -112.34 by residue)
QMean score : 0.574
(partial model without unconserved sides chains):
PDB file :
Tito_2REK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2REK-query.scw
PDB file :
Tito_Scwrl_2REK.pdb
: