Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPREHGKRSIDNETRSALKRQRPAVIWLTGLSGAGKSTIASALELALFEQKK-HTFLLDGDDLRLGLCRNLGYSDEDRTENIRRIAEVAKILLEAGLIVIVATISPFSRDRRLSRELIGIEHFIEVFVDTPLSECERRDPKGLYRKARSGKIENFTGIDSIYETPAQPNITIDTLSEDPDLAVKRIISYLETNQPA----
1D6J Chain:A ((8-210))
------HASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHE------------------VATPGEETGLPFVEVYVDVPVEAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDTKGYLPAKK
General information:
TITO was launched using:
RESULT:
Template:
1D6J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53028 for 1330 contacts (-39.9/contact) +
2D Compatibility (PS) -19013 + (NN) -10133 + (LL) 1892
1D Compatibility (HY) -9200 + (ID) 3300
Total energy: -92782.0 ( -69.76 by residue)
QMean score : 0.461
(partial model without unconserved sides chains):
PDB file :
Tito_1D6J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D6J-query.scw
PDB file :
Tito_Scwrl_1D6J.pdb
: