Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRSQKVILTNMCLIEDNKGRIVMQIRDPKRYSWSG-AALPGGHIEEGESLYDALVREVHEETGLTISNPKLVGMKHWYTDEG-IRYLVFLYKTYDFSGELQSSDEGDVVWIERSQLDKIELAYDMLNLLRVFDEDDISEMFYSKRLEDGFIRKFY
3HHJ Chain:A ((27-154))
-----SLLIVVACALLDQDNRVLLTQRPEGK-SLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLTFASHGYETFHLLMPLYFCSHYKGVAQGREGQNLKWIFINDLDKYPMPEADKPLVQVLKNF--------------------
General information:
TITO was launched using:
RESULT:
Template:
3HHJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89062 for 913 contacts (-97.5/contact) +
2D Compatibility (PS) -13852 + (NN) -7557 + (LL) 1796
1D Compatibility (HY) -8800 + (ID) 1550
Total energy: -119025.0 ( -130.37 by residue)
QMean score : 0.482
(partial model without unconserved sides chains):
PDB file :
Tito_3HHJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HHJ-query.scw
PDB file :
Tito_Scwrl_3HHJ.pdb
: