Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKAIDISHAFE-----KPLYNGVNLRIKPKESLAILGVSGSGKSTLLSHLATMLKPDSGTVSLLEHQDIYALNSKKLLELRRLKVGIVFQSHYLFKGFSALENLQVASILA-----KQ----EINHSLLEQLGIAHT-LKQGVGELSGGQQQRLSIARVLSKKPQIIIADEPTGNLDTTSANQVISMLQNYITENEGALVLATHDEHLAFTCSQVYRLEKESLIKEK
3TIF Chain:A ((1-226))
MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDN-IKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE
General information:
TITO was launched using:
RESULT:
Template:
3TIF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131535 for 1739 contacts (-75.6/contact) +
2D Compatibility (PS) -22726 + (NN) -6411 + (LL) 44
1D Compatibility (HY) -14800 + (ID) 3400
Total energy: -178828.0 ( -102.83 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_3TIF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TIF-query.scw
PDB file :
Tito_Scwrl_3TIF.pdb
: