Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYKDCIESTGDYFLLCDA--EGPWGIILESLAI--------------LG------IVVTILLLLAFLF----------LMRKIQDCSQWNV--LPTQLLFLLSVLGLFG-----------------LAFAFIIELNQQTAPVRYFLFGVLFALCFSCLLAHAS---------------NLVKLVRGCVSFSWTTILCIAIGCSLL---QIIIATEYVTL------------IMTRGMMFVNMTPCQLNVDFVVLLVYVLFLMALT------------------------FFVSKATFCG-------------PCENWKQHG------RLI-------------FITVLFSIIIWVVWISMLLRGNPQFQRQPQWDDPVVC-------------------IALVTNAWVFLLLYIVPELCILYRSCRQECPLQGNACPVTAYQHSFQVENQELSRARDSDGAEEDVALTSYGTPIQP---QTVDPTQECFIPQAKLSPQQDAGGV----- |
| 1VA6 Chain:A ((1-515)) | MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTLATTGHPEALGSALTHKWITTDFAEALLEFITPVDGDIEHMLTFMRDLHRYTARNMGDERMWPLSMPSYIAEGQDIELAQYGTSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAFWQAKSGDISGADAKEKISAGYFRVIRNYYRFGW--VIPYLFGASPAISSSFLTSLPFEKTESGMYYLPYATSLRLSDLGYTNKSQSNLGITFNDLYEYVAGLKQAIKTPSEEYAKIGIEKDGKRLQINSNVLQIENELYAPIRPKRVTRSGESPSDALLRGGIEYIEVRSLDINPFSPIGVDEQQVRFLDLFMVWCALADAPEMSSSELACTRVNWNRVILEGRKPGLTLGIGCETAQFPLPQVGKDLFRDLKRVAQTLDSINGGEAYQKVCDELVACFDNPDLTFSARILRSMIDTTGKAFAEAYRNLLREEPLEILREEDFVAEREASERRQQEMEAADTEPFAVWLE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VA6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -322252 for 2427 contacts (-132.8/contact) +
2D Compatibility (PS) -34988 + (NN) 5657 + (LL) 104
1D Compatibility (HY) -7200 + (ID) 2150
Total energy: -360829.0 ( -148.67 by residue)
QMean score : 0.138
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