Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPNMTSIREFILLGFTDNPELQVVIFFFMLITYLLSVSGNMIIIMLTLSNIHLKTPMYFFLRNFSFLEISFTTVFIPRFLINIATGDTTISYNASMAQVFFLILLGSTEFFLLAVMSYDRYVAICKPLHYTTIMSNKVCNWLVISSWLAGFLIIFPPVIMGLQLDFCDSSTIDHFICDSSPMLLIAC--TDTQFLELMAFLLAVFTLMVTLALVVLSYTLI-------LKTILKIPSAQQR-----KKAFSTCSSHMIVVSVSYGSC----------IFMCVKTSAKEGMALSKGVAVLNTSVAPMLNPFIYTLRNQQVKQALREFTKKILSLNKQ |
4UHR Chain:A ((18-304)) | ---------------------------------VLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIP-FAIAISTGFCAACHGCLFIACFVLVLTASSIFSLLAI-AIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPM---LGWNNCGQPKEGKA---GCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGL-FALCWLPLHIINCFTFFCPDC-HAPLWLMYLAIVLSHTN--SVVNPFIYAYRIREFRQTFRKIIRSHVLRQQE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4UHR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -219138 for 1924 contacts (-113.9/contact) +
2D Compatibility (PS) -25963 + (NN) -3667 + (LL) 4160
1D Compatibility (HY) -21600 + (ID) 3250
Total energy: -269458.0 ( -140.05 by residue)
QMean score : 0.253
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