Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | METANYTKVTEFVLTGLSQTPEVQLVLFVIFLSFYLFIL-----PGNILIICTISLDPHLTSPMYFLLANLAFLDIWYS----SITAPEMLIDFFVERKIISFDGCIAQLFFLHFAGASEMFLLTVMAFDLYTAICRPLHYATIMNQRLCCILVALSWRGGFIHSIIQVALIVRLPF-CGPNELDSYFCDITQVVRIACANTF--PEELV-----MICSSGLISVVCLIALLMSYAFLLALFKKLSGSGEN---TNRAMSTCYSHITIVVLMF--------GPSIYIYARPFDSFS-LDKVVSVFNTLIFPLRNPIIYTLRNKEVKAAMRKLVTKYILCKEK |
1F88 Chain:A ((40-317)) | -------------------------------LAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFV----FGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS----------------NFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAA----SATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPSTT |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -224906 for 1881 contacts (-119.6/contact) +
2D Compatibility (PS) -24329 + (NN) -2375 + (LL) 5480
1D Compatibility (HY) -22000 + (ID) 3200
Total energy: -271330.0 ( -144.25 by residue)
QMean score : 0.249
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