Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKALIFAAAGLLLLLPTFCQSGMENDTNNLAKPTLPIKTFRGAPPNSFEEFPFSALEGWTGATITVKIKCPEESASHLHV-KNA-TMGYL-------TSSLSTKL-IPAIYLLVFVVGVPANAVTLWMLFFRTR-SICTTVFYTNLAIADFLFCVTLPFKIAYHLNGNNWVFGEVLCRATTVIFYGNMYCSILLLACISINRYLAIVHPFTYRGLPKHTYALVTCGLVWATVFLYMLPFFILKQEYYLVQPDITTCHDVHNTCESSSPFQLYYFISLA-----FFGFLIPFVLIIYCYAAIIRTL---------NAYDHRWLWYVKASLLILVIFTICFAPSNIILIIHHANYYYNNTDGLYFIYL-IALCLGSLNSCLDPFLYFLMSKTRNHSTAYLTK |
4N6H Chain:A ((88-399)) | ------------------------------------------------------------------KVKEAQAAAEQLKTTRNAYIQKYLGSPGARSASSLALAIAITALYSAVCAVGLLGNVLVMFGIVRYTKMKTATNIYIFNLALADALATSTLPFQSAKYLM-ETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVPIMVMA---------VTRPRDGAVVCMLQFPSPSWYWDTVTKICVFLFAFVVPILIITVCYGLMLLRLRSVRLLSGSKEKDRSLRRITRMVLVVVGAFVVCWAPIHIFVIVWTL-VDIDRRDPLVVAALHLCIALGYANSSLNPVLYAFLDENFKRCFRQLCR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4N6H.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -278910 for 2057 contacts (-135.6/contact) +
2D Compatibility (PS) -29134 + (NN) -7288 + (LL) 4400
1D Compatibility (HY) -24400 + (ID) 4300
Total energy: -339632.0 ( -165.11 by residue)
QMean score : 0.220
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