Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTTFIPIIFSSVVVVLFVIGNFANGFIALVNSIERVKRQKISFADQILTALAVSRVGLLWVLLLNWYSTVFN-PAF-YSVEVRTTAYNVWAVTGHFSNWLATSLSIFYLLKIANFSNLIFLHLK--RRVKSVILVMLLGPLLFLACQLFVINMKEIVRTKEYEGNLTWKIKLRSAVYLSDATVTTLGNLVPFTLTLLCFLLLICSLCKHLKKMQLHGKGSQDPSTKVHIKALQTVIFFLLLCAVYFLSIMISVWSFGSLENKPVFMFCKAIRFSYPSIHPFILIWGNKKLKQTFLSVLRQVRYWVKGEKPSSP |
3PBL Chain:A ((41-230)) | --------YALSYCALILAIVFGNGLVCMAVLKE---RALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVV---MPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTT---G-DPTVCSIS-N---PDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINM |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PBL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -123046 for 1259 contacts (-97.7/contact) +
2D Compatibility (PS) -18540 + (NN) -4980 + (LL) 2104
1D Compatibility (HY) -8000 + (ID) 1100
Total energy: -153562.0 ( -121.97 by residue)
QMean score : 0.140
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