Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADKVQTTLLFLAVGEFSVGILGNAFIGLVNCMDWVKKRKIASIDLILTSLAISRICLLCVILLDCFILVLYPDVYATGKEMRIIDFFWTLTNHLSIWFATCLSIYYFFKIGNFFHPLFLWMKWRIDRVISWILLGCVVLSVFISLPATENLNADFRFCVKAKRKTNLTWSC------RVNKTQHASTKLFLNLATLLPFCVCLMSFFLLILSLRRHIRRMQLSAT-----------------------------------------------------------------------------------------------------------------------------------------------------GCRDPSTEAHVRALKAVISFLLLFIAYYLSFLIATSSYF-MP----ETELAVIFGESIALIYPSSHSFILILGNNKLRHASLKVIWKVMSILKGRKFQQHKQI |
| 3EML Chain:A ((22-472)) | ------SVYITVELAIAVLAILGNVLVCWAVWLNSN---LQNVTNYFVVSLAAADIAVGVLAIPFAITIS--TGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIR---IPLR-YNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWN--N--CGQ----SQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQ----------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3EML.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -233948 for 2110 contacts (-110.9/contact) +
2D Compatibility (PS) -29102 + (NN) -8009 + (LL) 3040
1D Compatibility (HY) -16400 + (ID) 2300
Total energy: -286719.0 ( -135.89 by residue)
QMean score : 0.155
|
|
|