Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------MKQKQYNLGKSLKCKKKSLLTKVKNLLRFQEEKKSVDEKSRDIAKPREIKSEKSIDNKKNELVIAKIY---------------------------------------------------------------------------------- |
| 4GKW Chain:A ((250-407)) | EDKEDEVADLKQDTESLQKQLE-ENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYRAQRF |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GKW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 21333 for 265 contacts (80.5/contact) +
2D Compatibility (PS) -7284 + (NN) -5036 + (LL) 56
1D Compatibility (HY) -400 + (ID) 750
Total energy: 7919.0 ( 29.88 by residue)
QMean score : 0.467
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