Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MILFSLLFSQSNTGARVILDKEIFYTELDGKMDLRFSYTFNKDSFNIKPKDKTSSYSYLRLFYLQRVYPNTQMGFNIKAE--VSNISNLKALDIEKLNMEEWYFIIKNQGLGSIEYGKRNLVSQSMLINTSKIYVAAGGANGYWANYANLLGNEKKDDGAGYDKDEVFWVKPSIYSNYSGLKLKLKQPVVSYISPEIYNFQLGLSYVPGKNNL---QYNNLVASGLSYKNGLSDDISFTTTLTGEFARGDLADCTNKNPSNLQCHNQLLHWNFGLKLKFFNLDCIFSYGNSGKSGKKL-----------DSEVSSTYYMNAGVAYRSDSRKLSLTYFSGGQDIIGKGINKLTSYALSLEYPLFMGTSYYFDIVKFNTEEPKVMNNNSGYILLAGLKLIF |
| 2POR Chain:A ((1-301)) | ------------------------EVKLSGDARMGVMYNGDD-------W----NFSSRSRVLF---TMSGTTDSGLEFGASFKAHESVGA-----ETGEDGTVFLS-GAFGKIEMGDALGASEALFGDLYEVGYTDLDD---RGGNDI-----------------P-YLTGD--E--RLT---AEDNPVLLYTYSAGAFSVAASMSDGKVGETSEDDAQEMAVAAAYTF---GN--YTVGLGYEKIDSPDT----------ALMADMEQLELAAIAKFGATNVKAYYADGELDRDFARAVFDLTPVAAAATAVDHKAYGLSVDSTFGATTVGGYVQVLDID----TIDDVTYYGLGASYDLGGGASIVGGIADNDLPN-------SDMVADLGVKFKF |
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General information:
TITO was launched using:
| RESULT:
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Template: 2POR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -10882 for 2246 contacts (-4.8/contact) +
2D Compatibility (PS) -29935 + (NN) -1523 + (LL) 4248
1D Compatibility (HY) -400 + (ID) 1950
Total energy: -40442.0 ( -18.01 by residue)
QMean score : 0.213
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