Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYNIKLYYSSYLRYNIRSSLYIPFKPNILVKLDILKNEVLSLKTVSPEKVVEVSNLID-KFRLKILTDFQNFEKQWFQEFKNTWKQKLMPNMRSEYLGLHCTKIY
4GQG Chain:A ((250-298))
---------------------------VLIRFHIQRNVIVIPKSVTPARIVENIQVFDFKLSDEEMATILSFNRNWRACNVLQSSHLEDYPFDAEY---------
General information:
TITO was launched using:
RESULT:
Template:
4GQG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17603 for 224 contacts (-78.6/contact) +
2D Compatibility (PS) -5029 + (NN) 146 + (LL) 2472
1D Compatibility (HY) -4800 + (ID) 600
Total energy: -25414.0 ( -113.46 by residue)
QMean score : 0.415
(partial model without unconserved sides chains):
PDB file :
Tito_4GQG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GQG-query.scw
PDB file :
Tito_Scwrl_4GQG.pdb
: