Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFTAIAKAIFVLGILTTSVMITENQSVNAKGKYEKMNRLYDTNKLHQYYSGPSYELTNVSGQSQGYYDSNVLLFNQQNQKF--QVFLLGKDENKYKEKTH-GLDVFAVPELVDLDGRIFSVSGVTKKNVKSIFESLRTPNLLVKKIDDKDGFSID-EFFFIQKEEVSLKELDFKIRKLLIKKYKLYEGSADKGRIVINMKDENKYEIDLSDKLDFERMADVINSEQIKNIEVNLK
5D3D Chain:A ((10-195))
---------------------------------------------LRAYYTKPSFEFEKQFGFMLKPW-TTVRFMNVIPNRFIYKIALVGKDEKKYKDGPYDNIDVFIVLEDNKYQLKKYSVGGITKTNSKKVNHKVE---LSITKKDNQGMISRDVSEYMITKEEISLKELDFKLRKQLIEKHNLY-GNMGSGTIVIKMKNGGKYTFELHKKLQEHRMADVIDGTNIDNIEVNIK
General information:
TITO was launched using:
RESULT:
Template:
5D3D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49457 for 1354 contacts (-36.5/contact) +
2D Compatibility (PS) -19521 + (NN) -1649 + (LL) 3704
1D Compatibility (HY) -15200 + (ID) 3950
Total energy: -86073.0 ( -63.57 by residue)
QMean score : 0.361
(partial model without unconserved sides chains):
PDB file :
Tito_5D3D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5D3D-query.scw
PDB file :
Tito_Scwrl_5D3D.pdb
: