Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDLTMLLDELKDMSFFNKGDICLIGCSTSEVIGEKIGTVGSMEVAETIFNALDVV----SKETGVTFAFQGCEHINRAITIEKSQYNPLTMEEVSVVPDVHAGGSLATYAFQHMKDPIVVEHITVPCGIDIGQTLIGMHIKHVCVPVRTSVKQVGQAIVTIATSRPKKIGGERAKYK
1PYO Chain:A ((83-157))
-QEMQEKLQNFAQLPAHRVTDSCIVALLSHGVEGAIYGVDGKLLQLQEVFQLFDNANCPSLQNKPKMFFIQACRGD------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1PYO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20578 for 394 contacts (-52.2/contact) +
2D Compatibility (PS) -7706 + (NN) -3659 + (LL) 7552
1D Compatibility (HY) -2000 + (ID) 600
Total energy: -26991.0 ( -68.51 by residue)
QMean score : 0.189
(partial model without unconserved sides chains):
PDB file :
Tito_1PYO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PYO-query.scw
PDB file :
Tito_Scwrl_1PYO.pdb
: