Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKIVQGALDTDKLLKDYQEEACTKNFGAFCVFVGIVREEGNVQGLSFDIYEALLKTWFEKWRHQPKDLG--VVLKMAHSVGDVLIRHSSFLCVLMGANTKNALKLYEYFFKNFKRNAPIWKCYLSDNERIYAKKKDHLLKGSGLLA
1FM0 Chain:E ((5-139))
KIVVGPQPFSVGEEYPWL---AERDEDGAVVTFTGKVR----VNALTLEHYPGMTEKALAEIVDEARNRWPLGRVTVIHRIGELWPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTRAPFWKREATPEGDRWVEARESDQQAAKRW-
General information:
TITO was launched using:
RESULT:
Template:
1FM0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109910 for 864 contacts (-127.2/contact) +
2D Compatibility (PS) -13270 + (NN) -622 + (LL) 348
1D Compatibility (HY) -4000 + (ID) 950
Total energy: -128404.0 ( -148.62 by residue)
QMean score : 0.434
(partial model without unconserved sides chains):
PDB file :
Tito_1FM0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FM0-query.scw
PDB file :
Tito_Scwrl_1FM0.pdb
: