Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRMKPIFLLIFLLLASLIAREKDASSNLFDLIDKGINREQELKEQEQKTRLKLAQ--------SPLVALEIVPQETP-----YLEWQGARESYYLKVSAVVESVVILKIDINQGRSCSLYPTPKSVSLVRNQSVAYEILCENQPLWIEVSTNLGKRTFQF
3KKI Chain:A ((271-382))
VNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLGLTIRSESQIIGLETGDERNTEKVRDYLESNGVFGSVFCR-PATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYGDFYFR---------------------
General information:
TITO was launched using:
RESULT:
Template:
3KKI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21699 for 483 contacts (-44.9/contact) +
2D Compatibility (PS) -10402 + (NN) 2356 + (LL) 960
1D Compatibility (HY) -5600 + (ID) 1250
Total energy: -35635.0 ( -73.78 by residue)
QMean score : 0.284
(partial model without unconserved sides chains):
PDB file :
Tito_3KKI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KKI-query.scw
PDB file :
Tito_Scwrl_3KKI.pdb
: