Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNHDLESIKQAALIEYEVREQGSSDVLDSNISKEPLEFIIGANQIIVGLEKAVLKAQIGEWEEIVIAPEEAYGVYESGYLQEVPRDQF-EGIELEKGMSVFGQTEDNQTIQATIKDFSNTHVMVDYNHPLAGKTLAFRFKVLGFREVSEEEILASHHDSGTGCCGGHGGHGGKKGGGCGCSCSHG
4ODO Chain:A ((10-144))
-------TIRYTLQVEGEVLDQGE------------LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQVVPLSAFPEDAEVVPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHPLAGKDLDFQVEVVKVREATPEELLHGHAHP--------------------------
General information:
TITO was launched using:
RESULT:
Template:
4ODO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63965 for 828 contacts (-77.3/contact) +
2D Compatibility (PS) -14206 + (NN) 17 + (LL) -748
1D Compatibility (HY) -6800 + (ID) 2300
Total energy: -88002.0 ( -106.28 by residue)
QMean score : 0.435
(partial model without unconserved sides chains):
PDB file :
Tito_4ODO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ODO-query.scw
PDB file :
Tito_Scwrl_4ODO.pdb
: