Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTEILTIMLVVSVLMGLVGLIAFLWGVKSGQFDDEKRMLESVLYDSASDLNEAILQEKRQKN
2J5D Chain:A ((159-186))
--AEFLKVFLPSLLLSHLLAIGLGIYIGRR---------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2J5D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9949 for 106 contacts (-93.9/contact) +
2D Compatibility (PS) -2842 + (NN) -2135 + (LL) 2396
1D Compatibility (HY) -2400 + (ID) 250
Total energy: -15180.0 ( -143.21 by residue)
QMean score : 0.285
(partial model without unconserved sides chains):
PDB file :
Tito_2J5D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J5D-query.scw
PDB file :
Tito_Scwrl_2J5D.pdb
: