Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYPFNHKEFVAMMEQYNLKSNSITIPEHTILNDLVTENRDCVYLLKSGILAGYIDF-DNDKIYSIFTSNFFMGYYTIFDNSSLVLTYQTLTECELIIYKKKDIEYSLSLFPENFSFQYTIMRTIAKHGY----YKSLLQYRDKKDQLAFVFEMLVKILDIPVEDGVAVLPKSISTTVIKNYCTLSKAFFYSQLKELKEAGIISKVK-LQWRINM-EALSEKNNSIN
1FT9 Chain:A ((19-213))
----------------FFRGFRSKIHAKGSLVCTGEGD-ENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFCM-------HSGCLVEATERTEVRFADIRTFEQKLQ---TCPSMAWGLIAILGRALTSCMRTIEDLMFHDIKQRIAGFFIDHANTTGRQT---GVIVSVDFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRGHYTIPNLVRLKAAA----
General information:
TITO was launched using:
RESULT:
Template:
1FT9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114440 for 1273 contacts (-89.9/contact) +
2D Compatibility (PS) -19949 + (NN) -1108 + (LL) 1932
1D Compatibility (HY) -2800 + (ID) 1300
Total energy: -137665.0 ( -108.14 by residue)
QMean score : 0.380
(partial model without unconserved sides chains):
PDB file :
Tito_1FT9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FT9-query.scw
PDB file :
Tito_Scwrl_1FT9.pdb
: