Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MWKLALCQTDVVFKYPDANYARIEKAIVEAAKNGADIAVLPEMWNTGYALNEL-AGVADLNGGRTKEFLATLSEKHQIAIIGGSVSISEGTKFSN-TMYAFDKYGGLLSSYKKVHLFQLMNEHLYLEAGNDKNLFRLDGVSCAGFICYDIRFPEWIRKHTSEGSEVIFVSAQWPAERVTQWEQLLIARAIENQTFVVAVNRVGDDPNNHFNGHSLVIDPLGNIVVHGGEEEGNIYAEIDLNLVAETRGIIPV--FTDRRPELY
4IZV Chain:A ((22-279))
--RIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPQLFGFGYVPSQICAQVSAEQVDAARSRLRGIARDRGIALVW-SLPGPEGPEQRGITAELADEHGEVLASYQKVQLYGPEEKAAFVPGEQPPPVLSWGGRQLSLLVAYDVEFPEMVRAAAARGAQLVLVPTALAGDETSVPGILLPARAVENGITLAYANHCGPEGGLVFDGGSVVVGPAGQPLGELGVEPGLLV--VDLPD---------ADYLQDRRAELH
General information:
TITO was launched using:
RESULT:
Template:
4IZV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138711 for 2161 contacts (-64.2/contact) +
2D Compatibility (PS) -26505 + (NN) -9102 + (LL) 1128
1D Compatibility (HY) -10000 + (ID) 3200
Total energy: -186390.0 ( -86.25 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_4IZV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IZV-query.scw
PDB file :
Tito_Scwrl_4IZV.pdb
: