Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYAEILAGGKGTRMGNVNMPKQYLPLKGKPIIVHTIEKFILNDRFEKIIIATPKDWINHTQDIIKKYIFDSRVIVIEGGTDRNETIMNGIRYVEKEFGLNEDDIIVTHDAVR----PFITHRIIEENIDMALEFGSVDTVIPAVDTIVESTNHDFITDIPVRGNIYQGQTPQSFNMKTIQKHYNNLTDDEKQI-LTDACKICLLAGEKVKLVNGGISNIKITTPYDLKVANAIVQERINS
3Q80 Chain:A ((8-230))
-VVAIVPAAGSGERLA-VGVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH-----RAMIVAGGSNRTDTVNLALTVLS------EPEFVLVHDAARALTPPALVARVVEALRD---GYAAVVPVLPLSDTIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRSYQRGSL-----EYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVR-----
General information:
TITO was launched using:
RESULT:
Template:
3Q80.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93828 for 1684 contacts (-55.7/contact) +
2D Compatibility (PS) -22652 + (NN) -8827 + (LL) 1920
1D Compatibility (HY) -14400 + (ID) 2950
Total energy: -140737.0 ( -83.57 by residue)
QMean score : 0.439
(partial model without unconserved sides chains):
PDB file :
Tito_3Q80.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q80-query.scw
PDB file :
Tito_Scwrl_3Q80.pdb
: