Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKEKLLVPALNCLLGLLFLGDHWFLFRLQNGELFAIVTLILLCTTSFLINKNHPKNLTLISMIITFLAVLSFLSTFLLA
3T1Y Chain:V ((2-25))
----------------------------GKGDRRTRRGKIWRGTY----GKYRPRK-----------------------
General information:
TITO was launched using:
RESULT:
Template:
3T1Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 774 for 120 contacts (6.5/contact) +
2D Compatibility (PS) -2530 + (NN) -1432 + (LL) 6132
1D Compatibility (HY) 2000 + (ID) 250
Total energy: 4694.0 ( 39.12 by residue)
QMean score : 0.088
(partial model without unconserved sides chains):
PDB file :
Tito_3T1Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3T1Y-query.scw
PDB file :
Tito_Scwrl_3T1Y.pdb
: