Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIFTYNREHVGDTLMVIVKDSQGAKLDVDRRGQVARVYLQDSKETVAWNIFEVSSLIVIEGAGQITLSDQDIKILNAELLKEGFEDSLVNNIEPT---FVVAQIKEMIDHPDSDHLHICQVEINDGKTVQIVCGAPNASVGLKTVAALPGAMMPN-GSLIFPGKLRGEDSFGMLCSARELALPNAPQVRGIIELSDQVIVGESFDANKHWKN
1JJC Chain:B ((19-125))
------------------------------------------------------------------------EVLEERLAGLGFETDRIERVFPIPRGVVFARVLEAHPIPGT---RLKRLVLDAGRTVEVVSGAENARKGIGVALALPGTELPGLGQKVGERVIQGVRSFGMALSPRELGVGEYGGGLLEFPEDALPPGTPLSEAWPEEVV
General information:
TITO was launched using:
RESULT:
Template:
1JJC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50246 for 640 contacts (-78.5/contact) +
2D Compatibility (PS) -11659 + (NN) -7850 + (LL) 5944
1D Compatibility (HY) -5600 + (ID) 1700
Total energy: -71111.0 ( -111.11 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_1JJC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JJC-query.scw
PDB file :
Tito_Scwrl_1JJC.pdb
: