Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDKKIVYYFDHDLSKKDMGGVGPTYTGKNLLFLLWWTYSYVAEDNLDIDTSLFEVPEFNDFYNNGLELYRIKNELANYNIRFGYEVNPKDSTKMLIGILPTDEEDYVKGYRNFIADISNPDTRYAIYHRLIKTMDTMLPIEQINVYKSLAKGNKK
1P30 Chain:A ((9-80))
------------------------------------WSYMHISGQ----DASEYLSPGLVQFARATETYFSLNNKFRNPTVAPTHDVTTDRSQRLTLRFIPVDREDTAYSYKARFTLAVGDNRVLDMASTYFDIRGVLDRGPTFKPYSGTAYNALA
General information:
TITO was launched using:
RESULT:
Template:
1P30.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -778 for 291 contacts (-2.7/contact) +
2D Compatibility (PS) -7250 + (NN) -1399 + (LL) 2084
1D Compatibility (HY) -2400 + (ID) 750
Total energy: -10493.0 ( -36.06 by residue)
QMean score : -0.034
(partial model without unconserved sides chains):
PDB file :
Tito_1P30.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1P30-query.scw
PDB file :
Tito_Scwrl_1P30.pdb
: