Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFKKIILSIATIAATASLAVSVQASEKVELKVATDSDTAPFTY-QKDGKFKGYDVDVVKAVFKGSKYKVTFKTVPFDTISTGIDAGKFDLSANDFSYNKERAEKYLFSDPISRSNYAVVGKKGSHYKSLSDLSGKSTEVLSGVNYAQVLENWNKNHPNKKPIKIKYVSGTTGVTSRLKNIESGKIDFILYDAISSDYIVKDQSLN--LSVSPLKGKIGNNKDGLEYLLLPKDKKGKTLQKFINKRIKVLKENGTLARLSKQYFGGDYVSNIDK |
3VVE Chain:A ((37-256)) | ----------------------------EIRIGTEGAFPPFNYFDERNQLTGFEVDLGNAIAERLGLKPRWIAQSFDTLLIQLNQGRFDFVIASHGITEERARAVDFTNPHYCTGGVIVSRKGGP-RTAKDLQGKVVGVQVGTTYMEAAQ--------KIP-GIKEVRTYQRDPDALQDLLAGRIDTWITDRFVAKEAIKERKLENTLQVGELVFQ--------ERVAMAVAKGNKSLLDALNRALAELMQDGTYARISQKWFGEDVRCK--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VVE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -44594 for 1808 contacts (-24.7/contact) +
2D Compatibility (PS) -23892 + (NN) -10219 + (LL) 3576
1D Compatibility (HY) -9600 + (ID) 3000
Total energy: -87729.0 ( -48.52 by residue)
QMean score : 0.398
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