Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MASIIYSPKDIFEQDFKVSMRGYDKKEVD----VFLDDVIK--DYENYLEQIEKLQMENR-RLQQALDKKESEASNVRNSGTAMYNQKPIAQSATNFDILKRISRLEKEVFGRQIRE
4N0B Chain:A ((336-427))
--------------------RGYDLQTCSSLTQLTLQEFIESGEYQKHIKKMKQHYKEKRERLITALEAEFSGEVTVKGANAGLHFVTEFDTRRTEQDILSHAAGLQLEIFGMSRFN
General information:
TITO was launched using:
RESULT:
Template:
4N0B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 7639 for 363 contacts (21.0/contact) +
2D Compatibility (PS) -8983 + (NN) -4792 + (LL) 1696
1D Compatibility (HY) -4800 + (ID) 1150
Total energy: -10390.0 ( -28.62 by residue)
QMean score : 0.431
(partial model without unconserved sides chains):
PDB file :
Tito_4N0B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4N0B-query.scw
PDB file :
Tito_Scwrl_4N0B.pdb
: