Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQKYYLVLAEVSIFQTVWLIPREDGSIGWTDEIKQAKPFL--SYEEAKNKTEAHMQSVFEFIASYKIIEFTKEELDNFLIPTS
3U84 Chain:A ((105-152))
-------------------LYPRE-GGVSSRELVKKVSDVIWNSLSRSYFKDRAHIQSLFSFITGTKLDSSGVAFAVVGACQAL
General information:
TITO was launched using:
RESULT:
Template:
3U84.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1545 for 206 contacts (-7.5/contact) +
2D Compatibility (PS) -4616 + (NN) 1006 + (LL) 2416
1D Compatibility (HY) -4400 + (ID) 800
Total energy: -7939.0 ( -38.54 by residue)
QMean score : 0.185
(partial model without unconserved sides chains):
PDB file :
Tito_3U84.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U84-query.scw
PDB file :
Tito_Scwrl_3U84.pdb
: