Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKMKKWFGLLFLGLALITLAACGQKTPEDIIKTELKDSYVGYSENPGSDYPFNDGDDVLTFNKKENSITNSQGQMTYFSVIPKEEVPAGTQRVIDELETKLKG---TNNFTIIINSTVKNPTK-KDSEGAYQIALSDSGKAIRIFELGREPRSFGYYDFSGKAK
1Q57 Chain:A ((423-485))
--------------------------------------------------------------------------LDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITD---------------------------
General information:
TITO was launched using:
RESULT:
Template:
1Q57.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11862 for 240 contacts (-49.4/contact) +
2D Compatibility (PS) -6572 + (NN) -5273 + (LL) 4564
1D Compatibility (HY) -4800 + (ID) 800
Total energy: -24743.0 ( -103.10 by residue)
QMean score : 0.267
(partial model without unconserved sides chains):
PDB file :
Tito_1Q57.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Q57-query.scw
PDB file :
Tito_Scwrl_1Q57.pdb
: