Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDNRFAQLKENFEKGSPKRRVPTSRPIAAQKAPESYNKKGRYPFSLHQDVRYDKLEALVAYHGAKSASDYLERLIVQEWEKMQRKLKNKEK
1NLA Chain:A ((5-47))
-------------------------------------SKMPQFLNRWPREVL-DLVRKVAEENG-RSVNSEIYQRVMESFKKEGRIGA----
General information:
TITO was launched using:
RESULT:
Template:
1NLA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3804 for 216 contacts (-17.6/contact) +
2D Compatibility (PS) -4864 + (NN) -3898 + (LL) 2700
1D Compatibility (HY) -1600 + (ID) 300
Total energy: -11766.0 ( -54.47 by residue)
QMean score : 0.469
(partial model without unconserved sides chains):
PDB file :
Tito_1NLA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NLA-query.scw
PDB file :
Tito_Scwrl_1NLA.pdb
: